Sitemap

A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.

Pages

About me

Posts

portfolio

publications

talks

teaching

CS M121/221: Introduction to Bioinformatics

Undergraduate/Graduate course, UCLA, Computer Science, 2022

Topics covered

  • CS Algorithms
    • Graph algorithms (genome assembly)
    • Clustering algorithms
    • Dimentional reduction algorithms (PCA, TSNE, UMAP)
  • Contemporary methods in Bioinformatics
    • DNA-seq and Census-seq (also known as *-seq)
    • RNA-seq, pseudoalignment and kallisto
    • Single-cell RNA-seq
  • Probability and statistics
    • Conditional probabilities
    • Statistical inference: Expectation Maximization